Dr. Hassan Kanso

Bioengineering | Protein Biochemistry | Computational Biology

Open to collaboration, consulting, and freelance projects in bioengineering, computational biology, and laboratory automation. Let's build something impactful together.

/about me

PhD-trained scientist with expertise in protein biochemistry, analytical assay development, and stem cell biology. Earned a PhD in Medical Engineering from Queen Mary University of London (2019–2023), specializing in bioactive self-assembled protein nanosheets for stem cell biotechnologies. Demonstrated success in bridging research and industry through scalable biomaterials, quality control, and innovative software solutions.

Selected Publications:

  • Artificial Cells Evidence Apical Compressive Forces Building up During Neuroepithelial Organoid Early Development (click here)
  • Strong Elastic Protein Nanosheets Enable the Culture and Differentiation of Induced Pluripotent Stem Cells on Microdroplets (click here)
  • Engineered Protein Nanosheets for the Scale-up of Mesenchymal Stem Cell Culture on Bioemulsions (click here)
  • Supercharged Protein Nanosheets for Cell Expansion on Bioemulsions (click here)

Portrait of Hassan Kanso

/experience

PhD Research @ Queen Mary University of London

  • Protein Biochemistry & Molecular Biology: Engineered bioactive self-assembled protein nanosheets for stem cell biotechnologies. Developed high-yield recombinant protein pipelines in E. coli & P. pastoris achieving >75 mg/batch with >95% purity through systematic optimization.
  • Advanced Biophysical Characterization: Conducted comprehensive analysis using Surface Plasmon Resonance (SPR), ELISA development, interfacial shear rheology, and mass spectrometry. Applied AlphaFold 2 modeling for structural assessment of 12 chimeric proteins.
  • Stem Cell & Organoid Culture: Maintained 4+ years contamination-free track record with human iPSCs, MSCs, and fibroblasts. Engineered cerebral organoids with biofunctionalized microdroplets for enhanced neurodevelopmental outcomes.
  • Biointerface Engineering: Developed nanoscale protein-stabilized emulsions using biotinylated BSA at oil-water interfaces. Created bioactive microdroplet platforms serving as informative scaffolds within cerebral organoids.
  • Computational Biology: Developed automated image analysis pipelines reducing processing time by 60%. Built high-throughput imaging and analysis systems using PyImageJ and MATLAB for quantitative organoid analysis.

Teaching & Academic Instruction

  • Undergraduate Demonstrator @ QMUL: Provided in-laboratory instruction in molecular biology and biochemistry modules, guiding students through recombinant protein expression, enzyme kinetics, chromatographic methods, and cell culture protocols.
  • A-Level Chemistry & Biology Tutor: Delivered targeted tutoring for Edexcel, AQA, OCR, and Cambridge International examinations. Helped students surpass predicted grades with several securing places at Russell Group universities.
  • Remote E-Teacher @ Cambridge International Biology: Delivered structured online A-Level Biology instruction to underprivileged international students (2024-2025), achieving average two-grade-level improvements over six-month programme.
  • Mentorship: Established structured mentorship programs for graduate and undergraduate researchers, conducting regular training sessions on advanced laboratory techniques and data analysis.

Computational Tools & Automation

  • Laboratory Toolkit Development (2025): Built cross-platform all-in-one lab application integrating 10+ interactive scientific tools including primer designer, buffer/pH calculator, serial dilution planners, and plasmid visualization. Integrated Electronic Lab Notebook (ELN) system with rich text editing and OCR capabilities.
  • Automated Image Analysis Pipelines: Developed high-throughput analysis pipelines using PyImageJ for fluorescent and confocal microscopy images. Implemented cell/nuclei segmentation and phenotypic quantification workflows for cerebral organoid datasets.
  • Data Processing & Visualization: Created MATLAB-based pipelines for interfacial rheology data analysis with batch processing capabilities. Built automated kinetic data fitting workflows for SPR analysis and rheological property extraction.
  • Programming Expertise: Python for data science, AI development, and laboratory automation. Flutter/Dart for cross-platform laboratory applications. Applied computational modeling during pandemic restrictions to maintain project momentum.

Technical Skills & Laboratory Expertise

  • Molecular Biology & Protein Biochemistry: Plasmid design, molecular cloning, recombinant protein expression in E. coli & P. pastoris, chromatographic purification using Γ„KTA Pure systems, SDS-PAGE, Western blot, and circular dichroism spectroscopy.
  • Advanced Analytical Techniques: Surface Plasmon Resonance (SPR), ELISA development, interfacial shear rheology, mass spectrometry, and enzymatic assays. Expertise in protein-ligand interaction kinetics and biophysical characterization.
  • Stem Cell & Organoid Culture: Human iPSC, MSC, and fibroblast culture with 4+ years contamination-free record. Cerebral organoid generation, 3D culture systems, cryosectioning, and immunohistochemistry (SOX2, PAX6, TUJ1, FOXG1, N-cadherin, E-cadherin, Ki67).
  • Microscopy & Imaging: Confocal microscopy (CSU-W1 SoRa), SEM/TEM, time-lapse live-cell imaging, and high-throughput quantitative image analysis using ImageJ/Fiji, PyImageJ, and custom Python/MATLAB pipelines.
  • Computational & Data Analysis: PyMOL for protein structure visualization, SnapGene for molecular cloning, OriginPro for statistical analysis, AlphaFold 2 modeling, and automated data processing workflows for kinetic modeling and batch analysis.

Leadership & Collaborative Excellence

  • Team Leadership: Led interdisciplinary research teams spanning molecular biology, materials science, and stem cell biology. Established structured mentorship programs and conducted regular training sessions for junior researchers.
  • Scientific Collaboration: Collaborated with specialists in mass spectrometry (Dr. Roberto Buccafusca) and advanced microscopy (Giulia Mastroianni) for comprehensive method validation. Coordinated joint research activities across disciplines.
  • Technical Communication: Communicated complex technical concepts to diverse audiences across academic and industry settings. Delivered scientific presentations covering protein-ligand interactions, structural analysis, and stem cell differentiation studies.
  • Publications & Impact: Co-authored multiple peer-reviewed publications on protein nanosheets and stem cell culture systems. Authored comprehensive SOPs, technical documentation, and research reports suitable for peer-reviewed publication standards.